At BC
Furumo Q, and Meyer MM: PIPETS: a statistically informed gene annotation agnostic analysis method to study bacterial termination using 3′-end sequencing BMC Bioinformatics 25: 363 (2024). [pubmed][article]
Geiwitz M, Page OR, Marello T, Nichols ME, Kumar N, Hummel S Belosevich V, Ma Q, van Opijnen T, Batten B, Meyer MM, Burch KS: Graphene Multiplexed Sensor for Point-of-Need Viral Wastewater-Based Epidemiology. ACS Appl. Biol. Mater. in press (2024) [pubmed][medRxiv]
Warrier I, Perry A, Hubbell SM, Eichelman M, van Opijnen T, Meyer MM: RNA cis-regulators are important for Streptococcus pneumoniae in vivo success. PLoS Genetics 20(3): e1011188 (2024). [pubmed][article]
Mukherjee S, Retwitzer MD, Hubbell SM, Meyer MM, Barash D: A computational approach for the identification of distant homologs of bacterial riboswitches based on inverse RNA folding Brief Bioinform. 24(3):bbad110 (2023). [pubmed][article]
Meyer, MM: Revisiting the Relationships Between Genomic G+C content, RNA Secondary Structures, and Optimal Growth Temperature J. Mol. Evol. 89:165-171 (2021). [pubmed][article]
Gray EC, Beringer DM, Meyer MM: Siblings or doppelgängers? Deciphering the evolution of structured cis-regulatory RNAs beyond homology. Biochem. Soc. Trans. 48:1941-1951 (2020). [pubmed][article]
Ram-Mohan N and Meyer MM: Comparative Metatranscriptomics of Periodontitis Supports a Common Polymicrobial Shift in Metabolic Function and Identifies Novel Putative Disease-Associated ncRNAs. Front Microbiol. 11:482 (2020) [pubmed] [article]
Liberles DA, Chang B, Geiler-Samerotte K, Goldman A, Hey J, Kacar B, Meyer MM, Murphy W, Posada D, Storfer A: Emerging Frontiers in the Study of Molecular Evolution. J. Mol. Evol. 88: 211-226. (2020). [pubmed][article].
Crum M, Ram-Mohan N, Meyer MM: Regulatory Context Drives Conservation of Glycine Riboswitch Aptamers. PLoS Comp. Biol 15(12):e1007564 (2019) [pubmed] [article]
Warrier I, Ram Mohan N, Zhu Z, Hazery A, Echlin H, Rosch J, Meyer MM, van Opijnen T: The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence. PLoS Pathogens 14(12):e1007461 (2018).[pubmed] [article]
Meyer MM: rRNA mimicry in RNA regulation of gene expression. In Regulating with RNA in Bacteria and Archaea. eds. Gisela Storz and Kai Papenfort. ASM Press (2018) [pubmed][article]
Babina AM, Parke DJ, Li GW, Meyer MM: Fitness advantages conferred by the L20-interacting RNA cis-regulator of ribosomal protein synthesis in Bacillus subtilis. RNA 24:11330-1143 (2018).[pubmed] [article]
Babina AM, Lea NL*, Meyer MM: In vivo Behavior of the Tandem Glycine Riboswitch in Bacillus subtilis. mBio 8(5):e01602-17 (2017). [pubmed][article]
Pei S, Slinger BL and Meyer MM: Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15. BMC Bioinformatics 18(1):298 (2017). [pubmed] [article]
Slinger BL and Meyer MM: RNA regulators responding to ribosomal protein S15 are frequent in sequence space. Nucleic Acids Res 44:9331-9341 (2016). [pubmed] [article]
Meyer MM: The role of mRNA structure in bacterial translation regulation. Wiley Interdiscip. Rev. RNA. (2016). [pubmed]
Slinger BL, Newman H*, Lee Y*, Pei S, Meyer MM: Co-evolution of bacterial ribosomal protein S15 with diverse mRNA regulatory structures PLOS Genetics 11:e1005720 (2015).[pubmed] [article]
Babina AM, Soo MW*, Fu Y, Meyer MM: An S6:S18 complex inhibits translation of the E. coli rpsF operon. RNA 21:1-8 (2015). [pubmed] [article]
Pei S, Anthony J, Meyer MM: The structural ensemble neutrality as a feature for structured RNA classification BMC Genomics.16:77 (2015). [pubmed] [article]
Dotu I, Garcia-Martin JA, Dixon BL, Mechery V, Meyer MM, Clote P: Complete RNA inverse folding: computational design of functional hammerhead ribozymes. Nucleic Acids Research 42:11752-11762 (2015).[pubmed] [article]
Slinger BL, Deiorio-Hagger K, Anthony J, Gilligan M*,Meyer MM: Discovery and validation of novel and distinct RNA regulators for ribosomal protein S15 BMC Genomics 15:657 (2014). [pubmed] [article]
Fu Y, Deiorio-Haggar K, Soo MW*, Meyer MM: Bacterial RNA motif in the 5′ UTR of rpsF interacts with an S6:S18 complex RNA 20:168-176 (2014).[pubmed] [article]
Deiorio-Haggar K, Anthony J, Meyer MM: RNA structures regulating ribosomal protein biosynthesis in bacilli. RNA Biology 10(7):1180-1184 (2013). [pubmed] [article]
Fu Y, Deiorio-Haggar K, Anthony J, Meyer MM: Most RNAs regulating ribosomal protein biosythesis in E. coli are narrowly distrbuted to Gammaproteobacteria. Nucleic Acids Research 41(6):3491-3503 (2013). [pubmed] [article]
Miller C, Anthony J, Meyer MM, Marth G: Scribl: An HTML5 Canvas-based graphic library for visualizing genomic data over the web. Bioinformatics 29(3): 381-383 (2013). [pubmed] [article]
Zarringhalam K, Meyer MM, Dotu I, Chuang, JH, Clote P: Integrating chemical footprinting data into RNA secondary structure prediction. PLOS ONE 7 (10), e45160 (2012). [pubmed] [article]
*undergraduate author
Before BC
Meyer MM, Hammond MC, Salinas Y, Roth A, Sudarsan N, Breaker RR: Aspects of ligand identification of challenging riboswitch candidates. RNA Biology 2011, 8:1
Weinberg Z, Perreault P, Meyer MM, Breaker RR: Exceptional Structured Non-coding RNAs Revealed by Bacterial Metagenome Analysis. Nature 2009, 462:656-659.
Poiata E, Meyer MM, Ames TD, Breaker RR: A variant riboswitch aptamer class of S-adenosylmethionine common in marine bacteria. RNA 2009, 15:2046-2056.
Meyer MM, Ames TD, Smith DP, Weinberg Z, Schwalbach MS, Giovannoni SJ, Breaker RR: Identification of candidate structured RNAs in the marine organism ‘Candidatus Pelagibacter ubique’. BMC Genomics 2009, 10:268.
Tripp HJ, Schwalbach MS, Meyer MM, Kitner JB, Breaker RR, Giovannoni SJ: ‘Candidatus Pelagibacter ubique’ is a functional glycine-serine auxotroph with a glycine riboswitch preceding malate synthase. Environmental Microbiology 2009, 11:230-238.
Meyer MM, Roth A, Chervin S, Garcia GA, Breaker RR: Confirmation of a second natural preQ1-binding aptamer. RNA 2008 14:685-695.
Meyer MM, Hochrein L, Arnold FH: Structure-Guided Recombination of Distantly Related beta-lactamases. Prot. Eng. Des. Sel. 2006, 19:563-570.
Drummond DA, Silberg JJ, Meyer MM, Wilke CO, Arnold FH: On the conservative nature of intragenic recombination. Proc. Natl. Acad. Sci. 2005, 102:5380-5385.
Meyer MM, Silberg JJ, Voigt CA, Endelman JB, Mayo SL, Wang ZG, Arnold FH: Library analysis of SCHEMA-guided protein recombination. Protein Sci. 2003, 12:1686-1693.
Segura MJR, Lodeiro S, Meyer MM, Patel AJ, Matsuda SPT: Directed evolution experiments reveal mutations at cycloartenol synthase residue His477 that dramatically alter catalysis. Org. Lett. 2002, 4:4459 -4462.
Meyer MM, Xu R, Matsuda SPT: Directed evolution to generate cycloartenol synthase mutants that produce lanosterol. Org. Lett. 2002, 4: 1395-1398.
Meyer MM, Segura MJR, Wilson WK, Matsuda SPT: Oxidosqualene cyclase residues that promote formation of cycloartenol, lanosterol, and parkeol. Angew. Chem. 2000, 39: 4090-4092.
Segura MJR, Meyer MM, Matsuda SPT: Arabidopsis thaliana LUP1 converts oxidosqualene to multiple triterpene alcohols and a triterpene diol Org. Lett. 2000, 2: 2257-2259.
Matsuda SPT, Darr LB, Hart EA, Herrera JBR, McCann KE, Meyer MM, Pang J, Schepmann HR, Wilson WK: Steric bulk at cycloartenol synthase position 481 influences cyclization and deprotonation. Org. Lett. 2000, 2: 2261-2263.
Godzina SM, Lovato MA, Meyer MM, Foster KA, Wilson WK, Gu W, de Hostos EL, Matsuda SPT: Cloning and characterization of the Dictyostelium discoideum cycloartenol synthase cDNA. Lipids 2000, 36:249-255.